Ancient DNA from Chalcolithic Israel reveals the role of population mixture in cultural transformation
We applied qpWave again, replacing Levant_ChL with Levant_BA_North, and found that the minimum number of source populations is only two. However, when we include the Levant_ChL population as an additional outgroup, three source populations are again required. This suggests that in the absence of the data from Levant_ChL there is insufficient statistical leverage to detect Anatolian-related ancestry that is truly present in admixed form in the Levant_BA_North population (data from the Levant_ChL population makes it possible to detect this ancestry). This may explain why Haber et al.26 did not detect the Anatolian Neolithic-related admixture in Levant_BA_North.
We applied qpWave again, replacing Levant_ChL with Levant_BA_North, and found that the minimum number of source populations is only two. However, when we include the Levant_ChL population as an additional outgroup, three source populations are again required. This suggests that in the absence of the data from Levant_ChL there is insufficient statistical leverage to detect Anatolian-related ancestry that is truly present in admixed form in the Levant_BA_North population (data from the Levant_ChL population makes it possible to detect this ancestry). This may explain why Haber et al.26 did not detect the Anatolian Neolithic-related admixture in Levant_BA_North.